Portrait of Umar Ahmad

Umar Ahmad, PhD

Senior Genomic Scientist

I strengthen genomic surveillance across Africa and investigate the molecular mechanisms of bladder cancer and oncolytic virus persistence through computational and functional genomics.

About

Biography

I direct the Directorate of Linkages and International Partnerships at Sa'adu Zungur University, where I lead the development of strategic institutional partnerships, international collaborations, and research networks. Previously, I served three terms as Head of the Department of Anatomy and as Unit Head of Human Genetics Informatics at the university.

Alongside my university responsibilities, I serve as Senior Technical Officer for Pathogen Genomics at the Institute of Genomics, Africa CDC, supporting the coordination and implementation of pathogen genomic surveillance programmes across national public health institutes and regional sequencing hubs in Africa. My work focuses on translating genomic evidence into actionable public health decisions, strengthening molecular diagnostic and sequencing capacities, and informing policies for infectious disease surveillance and outbreak preparedness and response.

My research focuses on applying high-throughput sequencing technologies, including bulk and single-cell RNA sequencing (RNA-Seq), whole-genome sequencing, and whole-exome sequencing, to investigate questions in cancer biology, human genetics, and infectious diseases. My broader interests include computational genomics, bioinformatics capacity development, open science, and the integration of genomic technologies into research and public health systems, particularly in Africa.

In 2022, I founded Open Science Community Nigeria, which has since evolved into the Open Science Community Network (OSCN), to advance open science practices, collaboration, and research capacity development. I serve on the Bioconductor Community Advisory Board, the Board of the International Network of Open Science & Scholarship Communities (INOSC), and the Board of the Directory of Open Access Journals (DOAJ). Through these roles, I contribute to initiatives promoting open research, equitable access to scientific knowledge, and inclusive global research communities.

I also founded BioSeq, a bioinformatics initiative providing computational analysis, research support, and hands-on training to researchers and institutions.

53
Publications
276
Citations
9
h-index
9
i10-index

From OpenAlex, 24 October 2026.

Research

Four strands

In detail

Cancer Genomics

Genomic and transcriptomic profiling of bladder cancer and urothelial cell carcinoma — molecular drivers, therapeutic resistance and protein–protein interaction networks in oncogenic pathways.

Oncolytic Virotherapy

Mechanisms of Newcastle disease virus (NDV) persistence in cancer cells — how a persistently infecting virus rewires the host transcriptome, and what that means for the therapeutic window.

Genomic Surveillance & Public Health

Computational pipelines for pathogen detection and population genomics, and the systems work of embedding sequencing into national public health institutes and regional hubs across West Africa.

Training & Open Science

Building bioinformatics capacity where it is scarcest — curricula, carpentry workshops, and the community infrastructure that keeps research open, reproducible and locally owned.

Selected work

Representative articles

All 53 outputs
Writing

Recent posts

All posts

Cost per reportable genome

25 October 2026

Notes from a technical briefing I gave the Pathogen Genomics Initiative team and the AU Member States on choosing sequencing platforms. The instrument specification is the least...

Open to collaboration. I am interested in work on cancer genomics, oncolytic virus biology, and pathogen genomic surveillance in low-resource settings — and in training partnerships that leave capacity behind. Get in touch.