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Every work cited in this book is listed here. The bibliography is generated from references.bib, in which each entry was resolved against the Crossref or OpenAlex metadata registries and carries a registered DOI, except for the handful of works that have none — the JMLR articles, the R manual and the FastQC documentation — which are marked as such in the file.

To rebuild the bibliography from scratch:

python scripts/build_bibliography.py    # resolve against Crossref
python scripts/resolve_openalex.py      # fill gaps using OpenAlex (needs an API key)
python scripts/normalise_bibliography.py  # replace each entry with the publisher's own record

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